Package: EcoNiche 1.0.2

Shuotao Zhou

EcoNiche: Community Niche Position and Width Estimation Tools

Provides methods for estimating species niche position and niche breadth under continuous environmental gradients. The package implements canonical correspondence analysis (CCA), partial CCA (pCCA), generalized additive models (GAM), and Levins' niche breadth metrics for species-level and community-level analyses. Methods are based on ter Braak (1986) <doi:10.2307/1938672>, Okie et al. (2015) <doi:10.1098/rspb.2014.2630>, Feng et al. (2020) <doi:10.1111/mec.15441>, Wood (2017) <doi:10.1201/9781315370279>, and Levins (1968, ISBN:978-0691080628).

Authors:Shuotao Zhou [aut, cre], Kai Feng [aut], Ye Deng [aut]

EcoNiche_1.0.2.tar.gz
EcoNiche_1.0.2.zip(r-4.7)EcoNiche_1.0.2.zip(r-4.6)EcoNiche_1.0.2.zip(r-4.5)
EcoNiche_1.0.2.tgz(r-4.6-any)EcoNiche_1.0.2.tgz(r-4.5-any)
EcoNiche_1.0.2.tar.gz(r-4.7-any)EcoNiche_1.0.2.tar.gz(r-4.6-any)
EcoNiche_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
EcoNiche/json (API)
NEWS

# Install 'EcoNiche' in R:
install.packages('EcoNiche', repos = c('https://yedeng-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yedeng-lab/econiche/issues

On CRAN:

Conda:

4.00 score 2 scripts 478 downloads 16 exports 25 dependencies

Last updated from:a4dafeba33. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK136
source / vignettesOK201
linux-release-x86_64OK133
macos-release-arm64OK159
macos-oldrel-arm64OK155
windows-develOK90
windows-releaseOK96
windows-oldrelOK84
wasm-releaseOK101

Exports:cca_calc_gradientcca_calc_groupcca_calc_speciescca_fit_ordinationcca_plot_group_envcca_prep_envcca_workflowcca_workflow_gradientcca_workflow_groupgam_calc_sitewidthgam_fit_modelgam_plot_specieslevins_calc_binnedlevins_calc_grouplevins_plot_pos_widthniche_width_calc

Dependencies:cliclustercpp11farverggplot2gluegtableisobandlabelinglatticelifecycleMASSMatrixmgcvnlmepermuteR6RColorBrewerrlangS7scalesvctrsveganviridisLitewithr

EcoNiche workflow

Rendered fromconiche-workflow.Rmdusingknitr::rmarkdownon May 10 2026.

Last update: 2026-03-06
Started: 2026-03-01